miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86110374|gb|BB921583.1|BB921583 TGAGACCCTTTGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTT
TTTGCTTCCTCTTCTCCTTTCATCACTCCAATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACT
CGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCACAGCAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGAT
CAGTTACAGCTCAAGCTGCAACACCATCATCATCTGATGGTATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGT
TTCATTCACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTA
TATGGTGTTTGCATGCTCAGACTCAAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCA
GAAATGTTGCTAACTTGGTTCCACCATATGACCAGGCAAAATATGCTGGAACTGGAGCTGCTATTGAGTATGCAGTTCTG
CATC




Most similar to sp|P17067|CAHC_PEA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score =  313 bits (801), Expect = 6e-85
 Identities = 161/189 (85%), Positives = 168/189 (88%), Gaps = 2/189 (1%)
 Frame = +3

Query: 3   RPF--ASLNXXXXXXXXTFPSLIQDKPVFASSSPFITPILREEMGKGYEEAIQELEKLLR 176
           RPF  ASLN        TFPSLIQDKPVFASSSP ITP+LREEMGKGY+EAI+EL+KLLR
Sbjct: 27  RPFVSASLNTSSSSSSSTFPSLIQDKPVFASSSPIITPVLREEMGKGYDEAIEELQKLLR 86

Query: 177 EKADLKATAAEKVEQITAQLGSVTAQAATPSSSDGIPTSEASERIKTGFIHFKKEKYDKN 356
           EK +LKATAAEKVEQITAQLG       T SSSDGIP SEASERIKTGF+HFKKEKYDKN
Sbjct: 87  EKTELKATAAEKVEQITAQLG-------TTSSSDGIPKSEASERIKTGFLHFKKEKYDKN 139

Query: 357 PALYGELAKGQSPPYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTG 536
           PALYGELAKGQSPP+MVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTG
Sbjct: 140 PALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTG 199

Query: 537 AAIEYAVLH 563
           AAIEYAVLH
Sbjct: 200 AAIEYAVLH 208